Minimotif Miner Query Engine was build as a more advanced interface with the Minimotif Miner Database (Vyas et al., 2009). The users can select different minimotif instances or consensus sequence to build a super-consensus for a set of instances. Position specific scoring matrices can also be created from selected instances. This allows the data from multiple studies to be used to arrive at a consensus sequences. An example application to SH3 domains showed that there are 10 distinct types of SH3 domain binding motifs which are shown in the figure.

PLEASE CITE USE OF MNM QUERY ENGINE:
Vyas J, Nowling RJ, Maciejewski MW, Rajasekaran S, Gryk MR, and Schiller MR. (2009). A Proposed Syntax for Minimotif Semantics, Version 1. BMC Genomics., 10, 360. PMID: 19656396